rs29655367 SNP Detail

Summary

• ID
  rs29655367
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20665434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTGGGT TTCCGTTCAC
  TGTTCCTAAG CAGTAAGGTT AAGGTTAACG TTTTCTAAAG ATCCACTTTT TAAAAAAAGG
  TATTACTGTA AACTGTTTTG TTTTTCCCCA AGAGTCTGAT TTCAAGTGCT AATTTGTAAT
  CTTCTGCCCA TCCCTTTTGA ACTCTGAATT ATTTAGCAGC TTAATGCAAA ACTTGCTAAA
  S
  GTTTCCAAGA TTTCAAAGGG CAAGAGAATT AGTGCTTTCT GCACGGTAGA GAATGAACAG
  GGTTTTATTC TAGAAGCAAA AGAAAAGCAG TTAAGTGCAG ATGTGTTCAC TGGTCTTTGG
  TTGCAGAGGT GAAAATGACA GCTATTCCTG ATTTGGCCTA CTTCAGTTTA TGGAGTCCCT
  GTTCTCAGAA TTAATGTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46869395	NES10959149	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29655367					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46869395	NES10959149	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20665434 () rs orientation: forward

Symbol	Name	Function Class
Araf	Araf proto-oncogene, serine/threonine kinase	within coordinates
Gm26065	predicted gene, 26065	1137 bp downstream
Rr8515	regulatory region 8515	within coordinates
Rr9663	regulatory region 9663	767 bp proximal
Tssr160680	transcription start site region 160680	1411 bp downstream
Tssr160681	transcription start site region 160681	1371 bp downstream
Tssr160682	transcription start site region 160682	781 bp downstream