rs29655394 SNP Detail

Summary

• ID
  rs29655394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108704120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGAAAAA GCCCCACATA
  GGTCATGAGT GGCTGCACGC CTGAGTTCAA TGTTCAGGGC CCGCTCGGGG GAGGGAGAGA
  ACTGTTCCCT GTAAGTTGTC TTCTGACCTC CGTACATGCT CTGTCATGTG TGCATCCACA
  CACAGGAACA ATTCAATACA TTACACAGGG CAGGCAGAAA AGGTAGGGAC ATGCAGAGAA
  Y
  GATTAAACTA CGACAGATCT GATAAAGAGG GAGAGTAACC TCAGAGCTTG AAACCCAGAA
  AGCTTGGATT ATATTTAATT TGTTAAGCTG GGCTCTGAGT GCAGGGGCAT GCACGAGAAC
  ATAGTCTCTC TGAAGTTGAA AATAATTAAC ACAATTATCA AAAGGGTTAA ATCAAGTTGG
  GTGTGGTTAC TCAGAGGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46868902	NES10711752	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29655394					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868902	NES10711752	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108704120 () rs orientation: forward

Symbol	Name	Function Class
Gm66359	predicted gene, 66359	within coordinates
Rr583317	regulatory region 583317	853 bp distal
Rr583318	regulatory region 583318	156 bp distal
Rr583319	regulatory region 583319	1766 bp proximal
Stxbp3	syntaxin binding protein 3	Intron
Tssr35171	transcription start site region 35171	1247 bp downstream