rs29655397 SNP Detail

Summary

• ID
  rs29655397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108704179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCTCGGG GGAGGGAGAG
  AACTGTTCCC TGTAAGTTGT CTTCTGACCT CCGTACATGC TCTGTCATGT GTGCATCCAC
  ACACAGGAAC AATTCAATAC ATTACACAGG GCAGGCAGAA AAGGTAGGGA CATGCAGAGA
  ATGATTAAAC TACGACAGAT CTGATAAAGA GGGAGAGTAA CCTCAGAGCT TGAAACCCAG
  R
  AAGCTTGGAT TATATTTAAT TTGTTAAGCT GGGCTCTGAG TGCAGGGGCA TGCACGAGAA
  CATAGTCTCT CTGAAGTTGA AAATAATTAA CACAATTATC AAAAGGGTTA AATCAAGTTG
  GGTGTGGTTA CTCAGAGGAT TGGCTGTCTA CACAGTGAGA TCCTGCCTCC AGAAAGAAAG
  AGAGAGAGAG AGAGAGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868905	NES10711754	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29655397					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868905	NES10711754	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108704179 () rs orientation: forward

Symbol	Name	Function Class
Gm66359	predicted gene, 66359	within coordinates
Rr583317	regulatory region 583317	912 bp distal
Rr583318	regulatory region 583318	215 bp distal
Rr583319	regulatory region 583319	1707 bp proximal
Stxbp3	syntaxin binding protein 3	Intron
Tssr35171	transcription start site region 35171	1188 bp downstream