GGTGTGGTTA CTCAGAGGAT TGGCTGTCTA CACAGTGAGA TCCTGCCTCC AGAAAGAAAG AGAGAGAGAG AGAGAGAGAA GAGGAAGAAG AAAAGAAGAG AAAAGAAAAG AAAAGAGGAA AAGAAAAACA AGAAGAAACC AGAGGGAGAA GGAAGCAACT ATGCTGTAAA GAAGCTGTGT GGGAGGTGAT GCAATTTTAT R AAAGTATTCT GCATTATAAA GTATGCCTTC CTGAACTTAT TTAACTAGGT TACAATAGAA GAAAAACTAC CTTTTATGTT ACTCTATGTT TCACACAGGA AGGGCCCTTG TTCAAGGAGA GCGCTGAGCA GCATTCTAAC CATTGGTCTA TAGCATCCCA GCGAACCACC ACAGTGGCTT CCCCTTACAG GCTTACCTCA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46868908 | NES10711688 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | G | A | G | A |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
||||
rs29655400 | SNP | A | A | A | A | A | A | A | A | G | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46868908 | NES10711688 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:108704500 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm66359 | predicted gene, 66359 | within coordinates | ||||||
Rr583317 | regulatory region 583317 | 1233 bp distal | ||||||
Rr583318 | regulatory region 583318 | 536 bp distal | ||||||
Rr583319 | regulatory region 583319 | 1386 bp proximal | ||||||
Stxbp3 | syntaxin binding protein 3 | Intron | ||||||
Tssr35171 | transcription start site region 35171 | 867 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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