rs29655977 SNP Detail

Summary

• ID
  rs29655977
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20651979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTGGCC TCGAACTCAG
  AAATCTGCCT GCCTCTGCCT CCCGAGTGCT GGGATTAAAG GCGTGCGCCA CCATGCCCAG
  CTGAAAACAG TCTTTCATGT CTCTATTTTA GCAAGACATC CTTTCACCTA TGCCACAGCA
  AAACATTTGA CATAACAGAC TTTCCAAAAA AAAAAAAAGA AAATCCAGAA GTTTCCACTT
  W
  AAGAGACTGT AAAGGAAACA GATTTATTCA ATGTTTGAGC AAATCCCATA ACAAGAAAAA
  CCTCTAGTTT CCTTCTACCT TTCCTGCAGC ATTGCTGTAG TTTTGTAAAA GAAACGAAAC
  AAAAGCCAGA AGATATGCAT GTGTTAACTG TGAGATAAGC TCTAAGAACT TGGTCAAATC
  TCTTCCTCAA AGGCAAGTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46869305	NES10959430	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29655977					SNP	A	A	A	A	A	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46869305	NES10959430	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20651979 () rs orientation: forward

Symbol	Name	Function Class
Rr5774	regulatory region 5774	622 bp proximal
Rr5775	regulatory region 5775	1222 bp proximal