rs29656312 SNP Detail

Summary

• ID
  rs29656312
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108705752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGATGCAC AAAGGTAGTG
  AAAAGTGGAC ACAAGAAGGA AAAGCAACTC AGGAGGGTTT TAGTACGATT GCCAGAGGAA
  GAAGCACTGT TTTAAGTTAG GAGAAAACCT AACAGCCCAG GTCAGCCACA GATCCAAGTG
  CAGTCTCTGG GTTTCACATG CAAACCTTGT CAGAGGGTTT AAACAGGTTG GTTTTCATTT
  W
  AAAAACAATC ATAAGAAAAA CTATTTTGGG GGGCTGGAGA GGTGGCTCAA TGGTTAAGAA
  AACTGACTGC TCTTCCAGAG GTCCTAAGTT CAATTCCCAG CAACCACATG GTGGCTCACA
  TCTGTAATGG GATCTGATGC CCTCTTCTGG TATTTCTGAA GAAAGCAACA GTGTACTCAC
  ATACATAAAG TAAATCTTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868920	NES10711648	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29656312					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868920	NES10711648	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108705752 () rs orientation: forward

Symbol	Name	Function Class
Gm66359	predicted gene, 66359	1232 bp downstream
Rr583318	regulatory region 583318	1788 bp distal
Rr583319	regulatory region 583319	134 bp proximal
Stxbp3	syntaxin binding protein 3	Intron
Tssr35171	transcription start site region 35171	381 bp upstream