rs29656479 SNP Detail

Summary

• ID
  rs29656479
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20666467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGCTAAG TTATGTTTTC
  CTTGTACCAG TCAACTTTTG CTTTAGATAC TTTGAAGTTT ATTATTAAAT GCATGGACCA
  CAGAGGTGAG AGGACCAAAT CAGCCAGAGC TACAACATAG TGAGAACTTG TCTCAACCCC
  TACAACCACC TTAACTCAGC ATAGGTTTCA ACCTCCTTTT TATCACTGAA CAAGAGAGAA
  W
  CAAGAGAGAC AGAGAAAAGG ATTATTAGCT GGAGACTTAC AGGCATTGCT TGGGTTTCAG
  AGGTGTGGAA GAAACAGTGA AATTTGTTTT TTTTTTCCTT TTCAAAAATA TGAAACACTT
  CATGAATTTG TGTATCATCC TTTCGCAAGG GCCATGCTAA TCTTCTCTAT CGTTCCAATT
  TTAGTATATG TGCTGCTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46869407	NES10959127	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29656479					SNP	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46869407	NES10959127	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20666467 () rs orientation: forward

Symbol	Name	Function Class
Araf	Araf proto-oncogene, serine/threonine kinase	within coordinates
Gm26065	predicted gene, 26065	104 bp downstream
Rr8515	regulatory region 8515	666 bp distal
Rr9663	regulatory region 9663	67 bp distal
Tssr160682	transcription start site region 160682	1814 bp downstream