rs29656796 SNP Detail

Summary

• ID
  rs29656796
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20652113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCAAAAC ATTTGACATA
  ACAGACTTTC CAAAAAAAAA AAAAGAAAAT CCAGAAGTTT CCACTTAAAG AGACTGTAAA
  GGAAACAGAT TTATTCAATG TTTGAGCAAA TCCCATAACA AGAAAAACCT CTAGTTTCCT
  TCTACCTTTC CTGCAGCATT GCTGTAGTTT TGTAAAAGAA ACGAAACAAA AGCCAGAAGA
  W
  ATGCATGTGT TAACTGTGAG ATAAGCTCTA AGAACTTGGT CAAATCTCTT CCTCAAAGGC
  AAGTTTCTCC TCTGGCATTT GGGTACCTGT GCCTTTTAGT CTTAACCTTC TCTTAGCATG
  GGGTTCTTGG GGGTCCATTG TTTTAGGATC CTTGTTTGTT TGGTTTTTTC TTTTTTTCTT
  TTTCTGAGAC AGGGTTTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46869314	NES10959434	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29656796					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46869314	NES10959434	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20652113 () rs orientation: forward

Symbol	Name	Function Class
Rr5774	regulatory region 5774	488 bp proximal
Rr5775	regulatory region 5775	1088 bp proximal