rs29656815 SNP Detail

Summary

• ID
  rs29656815
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7678984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTCAGTT CCACTGAGGA
  GGCGTCGCTG CTTCTGCTGC CGCCGATGTA AGTCATCTTA AAAAAAAAAA AAAAAAAAAG
  GAAGTGAAGG ATGATTAAGA GGGTCACGCC CTCTGCCCCT CTAGGTTCTC TAGTTTGTTT
  TTTTTTTTTT TTTCCTCCCT GTCATCTGTG CAATGCACCT GCTCAGGTAG GACTTTAAGA
  M
  CAAATAATTC TTGTGAGTCC ATCCAGTCTA GTATGTAAGT GGTAGCTTCA GAAAACCAAA
  ACTCGTATTA GTTGGGGGCA CATAGAAGTT CTGCATAGTA ACTATCTCCC ACAGTTATCT
  CCTGACATAG CTAATCACCA TTGTGATTGT TTCATTAAAG TGTTTTGTTT TGTTTTAATA
  ATAGGCCTGA ATTACCGAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49552834	NES12889950	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29656815					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49552834	NES12889950	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7678984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12955	CpG island 12955	482 bp distal
Gm16685	predicted gene, 16685	within coordinates
Il7	interleukin 7	164 bp upstream
Rr77757	regulatory region 77757	within coordinates
Tssr28303	transcription start site region 28303	1219 bp downstream
Tssr28304	transcription start site region 28304	35 bp downstream
Tssr32541	transcription start site region 32541	332 bp upstream
Tssr32542	transcription start site region 32542	268 bp upstream
Tssr32543	transcription start site region 32543	220 bp upstream
Tssr32544	transcription start site region 32544	192 bp upstream
Tssr32545	transcription start site region 32545	159 bp upstream
Tssr32546	transcription start site region 32546	139 bp upstream