rs29656817 SNP Detail

Summary

• ID
  rs29656817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7677861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC AGGAAGCCAG GAAGGGCTGC
  R
  TTGAAGAGGT ACTGGCTAGG GACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49552839	NES12889937	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	G	G	G		G	G	A	G		A
ss134559905	ENSMUSSNP5073164	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss320643279	CHEV_3_7612801	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29656817					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49552839	NES12889937	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7677861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12955	CpG island 12955	within coordinates
Gm16685	predicted gene, 16685	within coordinates
Il7	interleukin 7	within coordinates
Rr77757	regulatory region 77757	within coordinates
Tssr28303	transcription start site region 28303	96 bp downstream
Tssr28304	transcription start site region 28304	1070 bp upstream
Tssr32541	transcription start site region 32541	776 bp downstream
Tssr32542	transcription start site region 32542	841 bp downstream
Tssr32543	transcription start site region 32543	893 bp downstream
Tssr32544	transcription start site region 32544	924 bp downstream
Tssr32545	transcription start site region 32545	937 bp downstream
Tssr32546	transcription start site region 32546	970 bp downstream