rs29656821 SNP Detail

Summary

• ID
  rs29656821
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7677400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCAAAT GTTTTTGGTT
  CGCTAGTACC TAAGAGAGGG GAAGTAATTG TACCTAAAAC AGTGGGCCGG AAACCAATAC
  AATGGTTTGC AATGGGGTTG CAAAAGGAAA GAGCCTTAGG CTAGATCCTG CACCTCCATA
  GGTTCTCTTG CTTGAGGAAG TATTTAAAAC ACCTGCATTC CCTTAGGTAG ACCTCCTCAC
  W
  CTCCATTCTG TTCTCATCTC TATTAGTTCT AGCTACAAAT GGATTCCAGC CTCTGTCAAT
  TCTGTTCTTG TCCACTTTAA ATCCTTACTT ATTTAAAACT AATGCAAGCC TATTAGATTT
  GATCAGGGAG CTAAGAATTT GTACTCATGG GTACTTAAAG TTCTGCCTCC CTTAAGTAGC
  AAATATATAG AAGGAAAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49552843	NES12889921	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29656821					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49552843	NES12889921	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7677400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12955	CpG island 12955	361 bp proximal
Gm16685	predicted gene, 16685	365 bp upstream
Il7	interleukin 7	within coordinates
Rr77757	regulatory region 77757	within coordinates
Tssr28303	transcription start site region 28303	362 bp upstream
Tssr28304	transcription start site region 28304	1531 bp upstream
Tssr32541	transcription start site region 32541	1237 bp downstream
Tssr32542	transcription start site region 32542	1302 bp downstream
Tssr32543	transcription start site region 32543	1354 bp downstream
Tssr32544	transcription start site region 32544	1385 bp downstream
Tssr32545	transcription start site region 32545	1398 bp downstream
Tssr32546	transcription start site region 32546	1431 bp downstream