rs29660922 SNP Detail

Summary

• ID
  rs29660922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:7432509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGAGAA CTTCGCTCCC
  CTCCCGAGTT CTGCCTAAGG TGGGCTGCAC TTGGCAACTT CTACCTTTAT TTTCCATCTT
  CTCTGCCAAT CAGCTCATTG ATTTTCAGAG ATGCTGTATC TCATCGTCTT TTTCCCTTCT
  TCAGTTCCAT GACTGAGTTC ATTAAGGACC CAAGAAGGGC TGTGCCTCAC AGAGGGTTTC
  Y
  CTTAACACAC CCCTGTAGCT GTACAAAGGA ATAAACGTCC CGCTTTCAGC TCCGGACAGA
  CATGGTTTTC CCGAAGTGTT TTTCTTGCTG TCACCCTGGT TGGCTAACGA AAGGCTTGCT
  TGAGTGGAAT AACAGAATAT GTTGGGCTAT GCAGACTGTT CTCTCTGCAT ACATGGGTAC
  AGGAAAAGGA AACGGCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49554028	NES12896671	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29660922					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554028	NES12896671	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7432509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	501 bp distal
Pkia	protein kinase inhibitor, alpha	Intron
Rr573237	regulatory region 573237	769 bp distal
Rr573238	regulatory region 573238	within coordinates
Tssr814	transcription start site region 814	783 bp downstream
Tssr28292	transcription start site region 28292	855 bp downstream
Tssr28293	transcription start site region 28293	808 bp downstream
Tssr28294	transcription start site region 28294	755 bp downstream
Tssr28295	transcription start site region 28295	736 bp downstream