rs29660923 SNP Detail

Summary

• ID
  rs29660923
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7432071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT TTAAACACTG ATGACTATTA
  S
  AAATGTAAAA CCGTCTGAAT GTCCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45426693	mCV23344982	ABI	CRAMUS_MOUSE	f	SNP	G				G		C
ss49554029	NES12896670	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		G		C	C		G	C	G		C
ss134555758	ENSMUSSNP4854337	ENSEMBL	ENSEMBL_Sanger	f	SNP	G						C
ss320642057	CHEV_3_7367011	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29660923					SNP	G	G	G	G	G	G	C	C	C	C	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554029	NES12896670	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7432071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	63 bp distal
Pkia	protein kinase inhibitor, alpha	within coordinates
Rr573236	regulatory region 573236	1577 bp distal
Rr573237	regulatory region 573237	331 bp distal
Rr573238	regulatory region 573238	within coordinates
Tssr814	transcription start site region 814	345 bp downstream
Tssr28292	transcription start site region 28292	417 bp downstream
Tssr28293	transcription start site region 28293	370 bp downstream
Tssr28294	transcription start site region 28294	317 bp downstream
Tssr28295	transcription start site region 28295	298 bp downstream