rs29661904 SNP Detail

Summary

• ID
  rs29661904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7431372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGA TTCGGCGAAA TGAACAGTAC
  Y
  GATAAGGAAG ATGGAGAGGG TGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss45513103	mCV23344990	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T
ss49554030	NES12896669	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C		T	T	T	T	T	T
ss134555749	ENSMUSSNP669121	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29661904					SNP	T	T	C	C	C	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554030	NES12896669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7431372 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	within coordinates
Pkia	protein kinase inhibitor, alpha	357 bp upstream
Rr573236	regulatory region 573236	878 bp distal
Rr573237	regulatory region 573237	within coordinates
Rr573238	regulatory region 573238	369 bp proximal
Tssr814	transcription start site region 814	345 bp upstream
Tssr28292	transcription start site region 28292	277 bp upstream
Tssr28293	transcription start site region 28293	286 bp upstream
Tssr28294	transcription start site region 28294	361 bp upstream
Tssr28295	transcription start site region 28295	390 bp upstream