rs29661910 SNP Detail

Summary

• ID
  rs29661910
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7430853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTGGATCA ATAAACCTCT TGTTTTTTGC ATCAATCTTT
  GTCTCTGCGT CTCTGTGAGT GTGGGACATA ACGGACCTAA GGCTTTTCGG GTCTTACAGA
  M
  GCATGGAGGG AGAGCCAATT TAAGGAAGCA AGGACAAGAG GCTTGTGTGC ATCCATGCTT
  AGTTTGTCAC CAAGGGAAAT TCTGAGAAAT CCCTTGGGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss49554036	NES12925117	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C	A		C	C		A
ss134555740	ENSMUSSNP5298584	ENSEMBL	ENSEMBL_Sanger	f	SNP						A
ss320642055	CHEV_3_7365793	CHEVERUD	SCREENING_POP	f	SNP									C			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs29661910					SNP	C	C	C	C	C	A	C	A	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554036	NES12925117	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7430853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	489 bp proximal
Pkia	protein kinase inhibitor, alpha	876 bp upstream
Rr573236	regulatory region 573236	359 bp distal
Rr573237	regulatory region 573237	387 bp proximal
Rr573238	regulatory region 573238	888 bp proximal
Tssr814	transcription start site region 814	864 bp upstream
Tssr28292	transcription start site region 28292	796 bp upstream
Tssr28293	transcription start site region 28293	805 bp upstream
Tssr28294	transcription start site region 28294	880 bp upstream
Tssr28295	transcription start site region 28295	909 bp upstream