rs29661913 SNP Detail

Summary

• ID
  rs29661913
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7430556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCAAGCA CCAAAAAGAG
  AAAATCCTAA GCTGCCTTTC GCCCTTTGTA CTACCAATCA CCTAACTGTT GGTTAGCCAG
  TACCTTGGAA GGAAGCAAAA GGAGATGTGC AAGATTTGTG GTAGCTCAAA ATGACCACTC
  TTGTAAAAAG TTAAGTAAAT ATGTTCTTTT CCCAGAATTT GCCTCACTGC AAGGTGCGCT
  M
  AGAGATAGTC CTCTGATTGT TTAGAAAAAC CCACTCAATG TCTCCGGTCC TTAAGTCTGT
  CCCCTTAATG CCGTTAAAGG TTAACTAATG ATAAACTGCT AAACTGTGAC TGAAAACTGC
  TCTTAAGAAT GTATAAAAGG TGTGTGCTTT AGCTACTCGG GGTTGCTTCT ATCCTGATTT
  CAGGATGACC CCAGCATGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49554039	NES12896737	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29661913					SNP	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554039	NES12896737	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7430556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	786 bp proximal
Pkia	protein kinase inhibitor, alpha	1173 bp upstream
Rr573236	regulatory region 573236	62 bp distal
Rr573237	regulatory region 573237	684 bp proximal
Rr573238	regulatory region 573238	1185 bp proximal
Tssr814	transcription start site region 814	1161 bp upstream
Tssr28292	transcription start site region 28292	1093 bp upstream
Tssr28293	transcription start site region 28293	1102 bp upstream
Tssr28294	transcription start site region 28294	1177 bp upstream
Tssr28295	transcription start site region 28295	1206 bp upstream