rs29662856 SNP Detail

Summary

• ID
  rs29662856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7430267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATTAATC CTGCATTAAT
  AATTCTCAGA ATTATTAATT TTGTTTTTTG TTAACTCTGG TGGCTCTATT ACTGACTCTC
  TTCTGGAATT GATAGAGGAG TATGAAGTTT TTTTTGTCTT TTAGTTTCTT CCTTGCCCTT
  ATGCTGGACA GATTCCCAGG GTAATACTGG CAACCTCTAA TGATGCTCAC GAGGAAGGCC
  R
  AGATATGAGG AATGAGGCAC ATACACTGCA GAATACTAGT GATAAGGAAA CTCCCTGCTT
  GGAAATGACT TGCTTGGAAA AGAAACCCTG GCCAAGCACC AAAAAGAGAA AATCCTAAGC
  TGCCTTTCGC CCTTTGTACT ACCAATCACC TAACTGTTGG TTAGCCAGTA CCTTGGAAGG
  AAGCAAAAGG AGATGTGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49554042	NES12896734	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29662856					SNP	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554042	NES12896734	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7430267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	1075 bp proximal
Pkia	protein kinase inhibitor, alpha	1462 bp upstream
Rr573236	regulatory region 573236	within coordinates
Rr573237	regulatory region 573237	973 bp proximal
Rr573238	regulatory region 573238	1474 bp proximal
Tssr814	transcription start site region 814	1450 bp upstream
Tssr28292	transcription start site region 28292	1382 bp upstream
Tssr28293	transcription start site region 28293	1391 bp upstream
Tssr28294	transcription start site region 28294	1466 bp upstream
Tssr28295	transcription start site region 28295	1495 bp upstream