rs29662857 SNP Detail

Summary

• ID
  rs29662857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7430256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATCCTGC ACTAATTAAT
  CCTGCATTAA TAATTCTCAG AATTATTAAT TTTGTTTTTT GTTAACTCTG GTGGCTCTAT
  TACTGACTCT CTTCTGGAAT TGATAGAGGA GTATGAAGTT TTTTTTGTCT TTTAGTTTCT
  TCCTTGCCCT TATGCTGGAC AGATTCCCAG GGTAATACTG GCAACCTCTA ATGATGCTCA
  Y
  GAGGAAGGCC AAGATATGAG GAATGAGGCA CATACACTGC AGAATACTAG TGATAAGGAA
  ACTCCCTGCT TGGAAATGAC TTGCTTGGAA AAGAAACCCT GGCCAAGCAC CAAAAAGAGA
  AAATCCTAAG CTGCCTTTCG CCCTTTGTAC TACCAATCAC CTAACTGTTG GTTAGCCAGT
  ACCTTGGAAG GAAGCAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49554043	NES12896733	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29662857					SNP	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554043	NES12896733	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7430256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	1086 bp proximal
Pkia	protein kinase inhibitor, alpha	1473 bp upstream
Rr573236	regulatory region 573236	within coordinates
Rr573237	regulatory region 573237	984 bp proximal
Rr573238	regulatory region 573238	1485 bp proximal
Tssr814	transcription start site region 814	1461 bp upstream
Tssr28292	transcription start site region 28292	1393 bp upstream
Tssr28293	transcription start site region 28293	1402 bp upstream
Tssr28294	transcription start site region 28294	1477 bp upstream
Tssr28295	transcription start site region 28295	1506 bp upstream