rs29662860 SNP Detail

Summary

• ID
  rs29662860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7429936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCCCTC CCAATAGTGC
  CACTCTCTAC AGGCCAATCA TTCAAATACA GGAGACTGTG GTGGTTGTAC CTAATCCAAC
  CACCACACTG CTGTGGTTTC TTCCCACATT TCTGTTTAAA GTGCACATTC AATGCTAATG
  CCAGCCACAT ATTAGTGAAA CTAAAGATGT TACTTCTCAG CCTTATTCTG CAGTTGTGAA
  Y
  GAGAGGCATA TACCTCTATG ATGCAAGCTA AGAATCCAGC AATCTGTGAT AGGAGAAAGG
  GCTTGATTTT ATGAAAATGA GTGCAGAGAT GCACTAAGCT GTCTCAAATT TCAAGTGTAT
  ACATCCTGCA CTAATTAATC CTGCATTAAT AATTCTCAGA ATTATTAATT TTGTTTTTTG
  TTAACTCTGG TGGCTCTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49554046	NES12896730	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29662860					SNP	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554046	NES12896730	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7429936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	1406 bp proximal
Pkia	protein kinase inhibitor, alpha	1793 bp upstream
Rr573236	regulatory region 573236	279 bp proximal
Rr573237	regulatory region 573237	1304 bp proximal
Rr573238	regulatory region 573238	1805 bp proximal
Tssr814	transcription start site region 814	1781 bp upstream
Tssr28292	transcription start site region 28292	1713 bp upstream
Tssr28293	transcription start site region 28293	1722 bp upstream
Tssr28294	transcription start site region 28294	1797 bp upstream
Tssr28295	transcription start site region 28295	1826 bp upstream