rs29662861 SNP Detail

Summary

• ID
  rs29662861
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7429405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAAAAAC TAGACAAGCG
  TGCATAAAGA CAGCCTTTAG TTAGTGCCTG AGTCTCTTTA CTACCTGTAA GAAAGCTCTT
  GTGTTCCTGT GTGATGCTCA CGGTAGAAGA TCTTGGGAGG AGGACATATG GAAATCTGTA
  CTAATTCCTC AGTTTGCCTA TTCATCAACA GTGTGCTAAA CATGGCATCT ATTAAAGACT
  K
  AAAAGTAACA ATATGTTGAT ATAGCTATAA AAACACATTA AGGGATTATT TATTTCTGCT
  AGTGACAACA TTACAGTATG TTCACTGCTT ATCTTAGGGT TTCATTGCTG TGAAGAGACC
  CATGACCAAG GCAATTCTTA CAAAGGAAGG CATTAGTTAG GGCTGGCTTC CAGCTTCAGA
  GGTTTAGTTT AGCATCGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49554047	NES12896755	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29662861					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554047	NES12896755	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7429405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	1937 bp proximal
Rr573236	regulatory region 573236	810 bp proximal
Rr573237	regulatory region 573237	1835 bp proximal