rs29665487 SNP Detail

Summary

• ID
  rs29665487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:55348030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTTTTG GGCCTGTCAC
  GTGGATCACT ACTGGAGTGG GTGTGGCAGC TTTATTAACA CATATTGGCA ATCCACTGGG
  TGCTGTGTTT TATTGTATAT CCAACACATT AACGTTATGT TCCACTATCC ATGGAAAACA
  ACTAAGGGTG AGGACATATA AGGTACATGA GCAAGCAACT CTCAAGTATA TGAAAATTAG
  Y
  CTTAATAGAA GGAATTATTT GTTAATTATA ATGATGATTC TAATTAATGC TATGTGTTTA
  ATAAGCAAGA CCATAGACCC ATGTGTTGAA GGATTGATAT TCAGTCTATG TTGTCATGAG
  GAGGTGGTGG AACATTTAAA ATGTAGTGAT TATTAGCAGG TCATGTCATT GGGTACATAT
  CCAGTATTGA GGGACATACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
ss48374433	NES12215687	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	C		C	T
ss145788580	ENSMUSSNP3907843	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T					T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	MSM/Ms	PWD/PhJ	WSB/EiJ
rs29665487					SNP	T	T	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48374433	NES12215687	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:55348030 () rs orientation: forward

Symbol	Name	Function Class
Rr392765	regulatory region 392765	within coordinates