rs29665490 SNP Detail

Summary

• ID
  rs29665490
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:55346155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATATGGGG GAAAAAATTT
  TAAAGAGAAA GGTCTAGAGA AAAGTGATGA TATTTCAAAA GCCACTGCCC ACTAATTTCA
  ACATTCCATT TGTACAAATG AAGGTGGACA ATGTGATAAG TTCAGGAGCA GTCTACCTCA
  AGAAAATTTA ATTTTTTGCT ATTAATTTGA AATTTTCAAT AATTTTGTTC TATAAACTAG
  W
  CAACATACAG ATTACTAAGA AAAAAAATGT AAGAAACATC AATGCACACA TACACATCAG
  GATACCCTAA CAGGACAATG TAGTTGAAGT GTATGTATAG TCTAGCAGAG AATGGGCTTC
  TAAGAAACGG AGCTGAGTGG TAGATTTTAG AAGAATGAAG GAAGCAAGGC TTTTGGAAGT
  ATATAAGTAA GGGCTGCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48374436	NES12215733	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs29665490					SNP	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48374436	NES12215733	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:55346155 () rs orientation: forward

Symbol	Name	Function Class
Rr392765	regulatory region 392765	329 bp upstream