rs29666258 SNP Detail

Summary

• ID
  rs29666258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61500492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTTTA AGAACAGCAT
  TTGGTACAGT GAAAAAAATA AAATAAAGTC ATTACAGGAT TCAGTTATAT AAGTCACTTC
  AGAACATCAT CAATGGTTAT GACTTACTAA ACCAAACATA AAACAGATTT CACCTTTTTC
  CCTGTTGTTC GGTGACACAA ATGTTTTTAT ACAGCAGAGG CTGGCCATTT TGAATAGGAT
  R
  AAATTCTTCT GTATGTGTTG CCTTAATATC TTTCCTTCCT TCATACACAT AGGCAGCTCA
  CAATGCAGGG TACATGGCAT AAGAAGCAAT TCCACAGTAG TTGTTCTGAC CTCTGGGAAG
  CTTCATGTAG CCATTTTCTC CCCATCTTTC ACCATGGCTG AAAGAAATCA GGTTTTCCAT
  TTACAAGAAA AGAAACAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39105098	mCV25104786	ABI	CRAMUS_MOUSE	f	SNP		A	G	A		A
ss61823456	NES17746807	PERLEGEN	MM_PANEL2	f	SNP	A				G		A		G	A	A	G		G
ss149102515	ENSMUSSNP807581	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G			A
ss324370729	CHEV_13_61454039	CHEVERUD	SCREENING_POP	f	SNP								G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29666258					SNP	A	A	G	A	G	A	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61823456	NES17746807	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61500492 () rs orientation: forward

Symbol	Name	Function Class
Cts7	cathepsin 7	within coordinates