rs29668065 SNP Detail

Summary

• ID
  rs29668065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30305514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTA GAGGCGGCCC CGCGGCCACC
  R
  GGCCCGGCGG GCTGCCGGTG GGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45349698	mCV23383227	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	A
ss146398635	ENSMUSSNP4434799	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss320221002	CHEV_2_30271022	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29668065					SNP	G	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30305514 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11436	CpG island 11436			within coordinates
Crat	carnitine acetyltransferase			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm16323	predicted gene 16323			164 bp downstream
Ptpa	protein phosphatase 2 protein activator			548 bp upstream
Rr554310	regulatory region 554310			1776 bp distal
Rr554311	regulatory region 554311			1114 bp distal
Rr554312	regulatory region 554312			within coordinates
Rr554313	regulatory region 554313			12 bp proximal
Rr554314	regulatory region 554314			651 bp proximal
Tssr17115	transcription start site region 17115			116 bp upstream
Tssr17116	transcription start site region 17116			529 bp upstream
Tssr17117	transcription start site region 17117			578 bp upstream
Tssr17118	transcription start site region 17118			594 bp upstream
Tssr17119	transcription start site region 17119			685 bp upstream
Tssr23369	transcription start site region 23369			1384 bp upstream
Tssr23370	transcription start site region 23370			1322 bp upstream
Tssr23371	transcription start site region 23371			134 bp upstream
Tssr23372	transcription start site region 23372			92 bp upstream
Tssr23373	transcription start site region 23373			73 bp upstream
Tssr23374	transcription start site region 23374			53 bp upstream
Tssr23375	transcription start site region 23375			within coordinates
Tssr23376	transcription start site region 23376			7 bp downstream
Tssr23377	transcription start site region 23377			70 bp downstream
Tssr23378	transcription start site region 23378			112 bp downstream
Tssr23379	transcription start site region 23379			132 bp downstream
Tssr23380	transcription start site region 23380			265 bp downstream
Tssr23381	transcription start site region 23381			501 bp downstream