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rs29668065 SNP Detail
Summary
  • ID
    rs29668065
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:30305514 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CAGTA GAGGCGGCCC CGCGGCCACC
    R
    GGCCCGGCGG GCTGCCGGTG GGGCA                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss45349698 mCV23383227 ABI CRAMUS_MOUSE f SNP G G A G A
ss146398635 ENSMUSSNP4434799 ENSEMBL ENSEMBL_Sanger f SNP G A A
ss320221002 CHEV_2_30271022 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs29668065 SNP G G A G A G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:30305514 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11436 CpG island 11436 within coordinates
Crat carnitine acetyltransferase within coordinates
Gm16323 predicted gene 16323 164 bp downstream
Ptpa protein phosphatase 2 protein activator 548 bp upstream
Rr554310 regulatory region 554310 1776 bp distal
Rr554311 regulatory region 554311 1114 bp distal
Rr554312 regulatory region 554312 within coordinates
Rr554313 regulatory region 554313 12 bp proximal
Rr554314 regulatory region 554314 651 bp proximal
Tssr17115 transcription start site region 17115 116 bp upstream
Tssr17116 transcription start site region 17116 529 bp upstream
Tssr17117 transcription start site region 17117 578 bp upstream
Tssr17118 transcription start site region 17118 594 bp upstream
Tssr17119 transcription start site region 17119 685 bp upstream
Tssr23369 transcription start site region 23369 1384 bp upstream
Tssr23370 transcription start site region 23370 1322 bp upstream
Tssr23371 transcription start site region 23371 134 bp upstream
Tssr23372 transcription start site region 23372 92 bp upstream
Tssr23373 transcription start site region 23373 73 bp upstream
Tssr23374 transcription start site region 23374 53 bp upstream
Tssr23375 transcription start site region 23375 within coordinates
Tssr23376 transcription start site region 23376 7 bp downstream
Tssr23377 transcription start site region 23377 70 bp downstream
Tssr23378 transcription start site region 23378 112 bp downstream
Tssr23379 transcription start site region 23379 132 bp downstream
Tssr23380 transcription start site region 23380 265 bp downstream
Tssr23381 transcription start site region 23381 501 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory