CAGTA GAGGCGGCCC CGCGGCCACC R GGCCCGGCGG GCTGCCGGTG GGGCA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45349698 | mCV23383227 | ABI | CRAMUS_MOUSE | f | SNP | G | G | A | G | A | ||
ss146398635 | ENSMUSSNP4434799 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | A | A | ||||
ss320221002 | CHEV_2_30271022 | CHEVERUD | SCREENING_POP | f | SNP | G | A | |||||
SNP Consensus Information | ||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
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rs29668065 | SNP | G | G | A | G | A | G | A |
Location: Chr2:30305514 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11436 | CpG island 11436 | within coordinates | ||||||
Crat | carnitine acetyltransferase | within coordinates | ||||||
Gm16323 | predicted gene 16323 | 164 bp downstream | ||||||
Ptpa | protein phosphatase 2 protein activator | 548 bp upstream | ||||||
Rr554310 | regulatory region 554310 | 1776 bp distal | ||||||
Rr554311 | regulatory region 554311 | 1114 bp distal | ||||||
Rr554312 | regulatory region 554312 | within coordinates | ||||||
Rr554313 | regulatory region 554313 | 12 bp proximal | ||||||
Rr554314 | regulatory region 554314 | 651 bp proximal | ||||||
Tssr17115 | transcription start site region 17115 | 116 bp upstream | ||||||
Tssr17116 | transcription start site region 17116 | 529 bp upstream | ||||||
Tssr17117 | transcription start site region 17117 | 578 bp upstream | ||||||
Tssr17118 | transcription start site region 17118 | 594 bp upstream | ||||||
Tssr17119 | transcription start site region 17119 | 685 bp upstream | ||||||
Tssr23369 | transcription start site region 23369 | 1384 bp upstream | ||||||
Tssr23370 | transcription start site region 23370 | 1322 bp upstream | ||||||
Tssr23371 | transcription start site region 23371 | 134 bp upstream | ||||||
Tssr23372 | transcription start site region 23372 | 92 bp upstream | ||||||
Tssr23373 | transcription start site region 23373 | 73 bp upstream | ||||||
Tssr23374 | transcription start site region 23374 | 53 bp upstream | ||||||
Tssr23375 | transcription start site region 23375 | within coordinates | ||||||
Tssr23376 | transcription start site region 23376 | 7 bp downstream | ||||||
Tssr23377 | transcription start site region 23377 | 70 bp downstream | ||||||
Tssr23378 | transcription start site region 23378 | 112 bp downstream | ||||||
Tssr23379 | transcription start site region 23379 | 132 bp downstream | ||||||
Tssr23380 | transcription start site region 23380 | 265 bp downstream | ||||||
Tssr23381 | transcription start site region 23381 | 501 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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