rs29669564 SNP Detail

Summary

• ID
  rs29669564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:110192466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAA AGTGCAAATT TGGATAAAAT
  R
  AAGCAGTTAC AATGGAAATA TTAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45349816	mCV24372480	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147209378	ENSMUSSNP6665126	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320456751	CHEV_2_110202278	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29669564					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110192466 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12041	CpG island 12041	492 bp proximal
Fibin	fin bud initiation factor homolog (zebrafish)	within coordinates
Gm30319	predicted gene, 30319	within coordinates
Rr55365	regulatory region 55365	within coordinates
Tssr25605	transcription start site region 25605	783 bp downstream
Tssr25606	transcription start site region 25606	834 bp downstream
Tssr25607	transcription start site region 25607	864 bp downstream
Tssr25608	transcription start site region 25608	971 bp downstream
Tssr25609	transcription start site region 25609	994 bp downstream
Tssr25610	transcription start site region 25610	1014 bp downstream
Tssr25611	transcription start site region 25611	1036 bp downstream