rs29669616 SNP Detail

Summary

• ID
  rs29669616
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144107795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATTGTTTA CTCCTATTCC AAACTCATCT GTATGTATTC
  TTGGGCAACT TCTGTGTTAC TAAAACCTAA CAAGCAACTG AGGTACCCAC CCACAAGCAC
  W
  ATACCAACTC TCCCTTTAAA TGGCTCAACA AGTGGGAGGT GTAAACTCAT AATAAATAAA
  TGTAAAAAAT AACATGAACA AGGAACTAGA AGGGCTGCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45350315	mCV22515742	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss147788980	ENSMUSSNP4213925	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29669616					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144107795 () rs orientation: forward

Symbol	Name	Function Class
Rr566421	regulatory region 566421	833 bp distal
Rr566422	regulatory region 566422	5 bp proximal
Rr566423	regulatory region 566423	1509 bp proximal
Snord17	small nucleolar RNA, C/D box 17	107 bp downstream
Snx5	sorting nexin 5	Intron
Tssr20523	transcription start site region 20523	202 bp upstream
Tssr26593	transcription start site region 26593	311 bp downstream