rs29669625 SNP Detail

Summary

• ID
  rs29669625
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9167598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGACAAG CCCTCCATCA
  CTGACCTAGA GCCTTAACCA TTCTATTCCG ATCTGCTCAA TTGTCCACAC AGGCGTCTGT
  CAGCCTCAGG ACAGCTGGGG TTACAGGTCT GCACCATCAG GCCCTTTCCT CTGTGTGCCT
  GGGATAGGTC CTAGAGTCTC AGGCCTGCTA AGTAATCTGT CTTCTACTCA GCTACAGCCC
  W
  CCCGGTATTG GTAAGTAGGA GTCACTTGTA TTCCCTTCCA TCCCACTGAC ACTCATGGGC
  TGGGATATAA AGCTCTGCCT ACAGACCAAG TAGAGGTGGG TATGGTCAGG TCCACTGCAA
  GGAATGAACA AGGTATGTCC TGGGGCGAAG GCAAGGGGCT GAGAACATCT GCCTATTTTT
  ATCTCTCTGA GGTTTGTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49555891	NES12900228	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29669625					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49555891	NES12900228	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9167598 () rs orientation: forward

Symbol	Name	Function Class
Rr374480	regulatory region 374480	within coordinates
Rr573385	regulatory region 573385	1426 bp distal
Rr573386	regulatory region 573386	701 bp distal