rs29669628 SNP Detail

Summary

• ID
  rs29669628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9167275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCACAGGAC AAGAAGCCAC AACTTGCTAA ACCCCAGTGT
  GGAAAATGGC GGGAGGCAGA GCTCGTAATT TACACACTTG TGGGTGTGAG CTCAGGTGAT
  Y
  GATACAAGGA GGCTCTAGAA CTCGTGCCTT ATTCCTAGTG TGCATTAGAT CGGCAGCACA
  GATGTCACAA GCTTTGGCTT TGATCCTTCT CTTACTGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45456552	mCV23610144	ABI	CRAMUS_MOUSE	f	SNP		C						T
ss49555894	NES12900302	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C
ss134572051	ENSMUSSNP2881344	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29669628					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49555894	NES12900302	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9167275 () rs orientation: forward

Symbol	Name	Function Class
Rr374480	regulatory region 374480	within coordinates
Rr573385	regulatory region 573385	1103 bp distal
Rr573386	regulatory region 573386	378 bp distal