rs29669680 SNP Detail

Summary

• ID
  rs29669680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9776075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGTTAT AAACTTGTGC
  TGAAATTCAT TCTGCTACTT ACTTTTTTTA TGTACCATGT GCTGGTCTTG AATTGGCTAA
  ATAGCCAAGG AGGGCCTTGA ACTCCTGTTT CTACCACCCC TGCCTGCAGA GTGTTGGGAT
  TAGCAAGATA GATAGATATT TTGTGCTGAA AACTCCACAA TCTATTATCA TCCTGTCAAA
  Y
  ATACAGATTT GATGATTTCA CTGATCAGTA AATGATTTCA ATCATTAGTA AAAACTATTG
  GCCTTTTATC TTTAAAGCAG GTATTTTAAG CCACAAGGTG GCAGCCTAAC CCTAGTTTCA
  GTCCCAGTGA ACAGGCCTGA GCAGCATGGA GAGGTCCTGA ATAATTGTGG TTGGTCATGT
  TTGGTGTTTA ATTCTTCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49556886	NES12900151	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29669680					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49556886	NES12900151	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9776075 () rs orientation: forward

Symbol	Name	Function Class
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1	within coordinates
Rr69578	regulatory region 69578	1675 bp distal
Rr69580	regulatory region 69580	875 bp distal
Rr69581	regulatory region 69581	within coordinates
Rr76860	regulatory region 76860	1192 bp distal
Rr76861	regulatory region 76861	within coordinates
Rr82268	regulatory region 82268	1683 bp distal