rs29669681 SNP Detail

Summary

• ID
  rs29669681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9775779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTGACCG TTACTGACCT
  CAAGTGACAC TATGACACCT GTGGATCACA CCAAGCTGAG CTCCAGAAGG TGGTAGTGTT
  AACACAGCTA GAGAGCAGTG AACAGTTGTG CACAAGGTCT TTTTGCTTTA TAGTGTGCTT
  CATTATTGGA TACACTGGCT GATTCCAATC AAGTTGCAGA CAGTCATGAA TAAAAATACA
  Y
  TGCAGTCCTG AAAAGGGGCA GTGGAGTTTC CCGCCCCTCT TAAGCATGGC AATTCTGATG
  ACTCGGGCAC ACAACTCCTT GACTCAGGTG GGTACTTCAG GTTATAAACT TGTGCTGAAA
  TTCATTCTGC TACTTACTTT TTTTATGTAC CATGTGCTGG TCTTGAATTG GCTAAATAGC
  CAAGGAGGGC CTTGAACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49556887	NES12900197	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29669681					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49556887	NES12900197	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9775779 () rs orientation: forward

Symbol	Name	Function Class
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1	within coordinates
Rr69578	regulatory region 69578	1379 bp distal
Rr69580	regulatory region 69580	579 bp distal
Rr69581	regulatory region 69581	within coordinates
Rr76860	regulatory region 76860	896 bp distal
Rr76861	regulatory region 76861	164 bp proximal
Rr82268	regulatory region 82268	1387 bp distal