rs29670417 SNP Detail

Summary

• ID
  rs29670417
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:168431762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC ATCTCCTCTA CAGCCTCTGG
  R
  CTGAACTAGG GAGCTAACCA TCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45350714	mCV23244193	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss148270646	ENSMUSSNP6051796	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320609877	CHEV_2_168415342	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29670417					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168431762 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12775	CpG island 12775			within coordinates
Nfatc2	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2			Intron
				Noncoding-Transcript-Variant
Rr571026	regulatory region 571026			within coordinates
Rr571027	regulatory region 571027			339 bp proximal
Tssr21877	transcription start site region 21877			599 bp upstream
Tssr27851	transcription start site region 27851			449 bp downstream
Tssr27852	transcription start site region 27852			473 bp downstream