rs29670436 SNP Detail

Summary

• ID
  rs29670436
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9165890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCACCAT ACCTGGAAAA
  GAACACTGCT TAATGAACCA GTGAGTGAAT AAATGCAGGA AAGAAGAAAG GTCTCAAGAG
  ACGGCTTTGT CTTGAGCCAT GGAGCAAAGA AAGAGAACCA GGCCCTCATG GTTGGGGGCA
  TTAGAAGCCC CTCAGACACA GCTCTCCTCG CTCTCCCCTG CAACTGTTGC GTGTTGAACT
  M
  TCTGTGAAGA TGAAGAAGAG GAGGAGGATA ATGGCGGTTT GTCTTGCTGG TGGAGCTGGA
  CCTAGGGTTT TACTGTGTTG GGCAAGCATT CCACACTGAA TTACTTTACT GCTCCAGCTC
  GTTCCCCAAG ACTCTTATAT TTGCACGTGG CTCTCTTTCT GAAGGGCTTC CTGCTCTTTG
  AGAACAAAGC CTGGTCTGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49555902	NES12900294	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29670436					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49555902	NES12900294	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9165890 () rs orientation: forward

Symbol	Name	Function Class
Rr374480	regulatory region 374480	89 bp upstream
Rr573385	regulatory region 573385	within coordinates
Rr573386	regulatory region 573386	421 bp proximal