rs29670438 SNP Detail

Summary

• ID
  rs29670438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9165526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATCTTGC CCATAGGAGT
  CCTGGAATTA GAGGTGCAGG CTACTGCACC CAGCTTTTAT ATGGGTTCTA GAGATCAAAA
  TCACGGTGTC AGCTGGTGAG GCCATCTCTA GCCTTCACGT GAAGTTATTT TAGTAACATG
  GTTATAAGGC TTTTTTTTTC CTGACTTGCC TCCCCTGATC AGGGACAAAC CTCAAGAGGT
  Y
  GAGACTTTGC CATTTCCCAA GGCCTATGCC ATGGCCAAGG TCAAACAAGA ACATTTTTGT
  TTGTTCGTCT TTTGAGATAA GATCTTGTGA TGGAGCCTAT GCTGGTCTTG AACCCTAGAT
  AATTTGAGTT CCTCTGCCTC CCAAATGCTG GGATTACAGG TGTATACCAC CATACCTGGA
  AAAGAACACT GCTTAATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49555904	NES12900394	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29670438					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49555904	NES12900394	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9165526 () rs orientation: forward

Symbol	Name	Function Class
Rr374480	regulatory region 374480	453 bp upstream
Rr573385	regulatory region 573385	332 bp proximal
Rr573386	regulatory region 573386	785 bp proximal