rs29670439 SNP Detail

Summary

• ID
  rs29670439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9165409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCTCCTGT CTTGAGTCCC ATCTTGCCCA TAGGAGTCCT
  GGAATTAGAG GTGCAGGCTA CTGCACCCAG CTTTTATATG GGTTCTAGAG ATCAAAATCA
  Y
  GGTGTCAGCT GGTGAGGCCA TCTCTAGCCT TCACGTGAAG TTATTTTAGT AACATGGTTA
  TAAGGCTTTT TTTTTCCTGA CTTGCCTCCC CTGATCAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45452424	mCV23610152	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss49555905	NES12900393	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29670439					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49555905	NES12900393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9165409 () rs orientation: forward

Symbol	Name	Function Class
Rr374480	regulatory region 374480	570 bp upstream
Rr573385	regulatory region 573385	449 bp proximal
Rr573386	regulatory region 573386	902 bp proximal