rs29670459 SNP Detail

Summary

• ID
  rs29670459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9773755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTTCCT CTTTCTTGTT
  CTCTTAACAG GAGGCGGCTG CTGGAATAGG TGAAGTGTGG GGGGTACCAG CCTAGCATGA
  CAGTCCAGGG AGGGAGGATG AAAGGGGGAC ACTCAGAGCT ACTGAATAAA AGATGGAACT
  TACAGCTTAC CCCCTTCAAT TAGAACTTCA TGAAAAGCCA CTGAAAGAAA TCCTCCCCAG
  Y
  TCTTGCCCTG TACAAAAATC TCATAATGAG AAGAGTAATT GTCTGGTTCA CTTCGGGGAG
  CCAGGGTAAA ACCTCAGGCT CAGCCACAGA CGGCTTCCAC CCCAGTGCCC CACTGCTACT
  TGACTGGAGG ACTGAGGCTA CAGCAGGGGC GGAGGAGAGA CAGGAGACAA AACGGTCTCC
  AGAGGAGCGT GGCATCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49556895	NES12900381	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29670459					SNP	C	C	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49556895	NES12900381	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9773755 () rs orientation: forward

Symbol	Name	Function Class
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1	within coordinates
Rr69578	regulatory region 69578	46 bp proximal
Rr69580	regulatory region 69580	1046 bp proximal
Rr69581	regulatory region 69581	1846 bp proximal
Rr76860	regulatory region 76860	904 bp proximal
Rr82268	regulatory region 82268	within coordinates