rs29670611 SNP Detail

Summary

• ID
  rs29670611
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181300745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGAGGTCA GGGACAGCCA GGGACCTCCT GTGATGCCCA
  AAAGGTATGG GGAAGGTTCC CCCAAACAAC TATTTGTTTA CTCCTCAGGC CCCACCCCCA
  Y
  GTCCCTCCCC TGCTCTGGCT TTCCTTCCTT TCCAACTTAG GAGAGTAGCA TCCTACTGTC
  TATTGAGTCC TTGGGTCAGA CCCTTCTTGG GAGTGTGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45349840	mCV22775660	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss148402954	ENSMUSSNP2733900	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29670611					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181300745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12934	CpG island 12934	153 bp proximal
Gm29797	predicted gene, 29797	Intron
Gm74533	predicted gene, 74533	within coordinates
Rr573063	regulatory region 573063	411 bp proximal
Rr573064	regulatory region 573064	452 bp proximal
Rr573065	regulatory region 573065	769 bp proximal