rs29670635 SNP Detail

Summary

• ID
  rs29670635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126774728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGAGAGG GCTCCAGGAC
  CAAGGAGGAG GAAGCTCCCC ACCCACTCCT ACCCCCGCCC GCGGGTTTCT CCCAGGGGTT
  GGGCATTTCG CTGGATTTCG GGGGCTGGGG GCGGGTGAGG AATGCTGGGA CTCAAGGACG
  AAGGCAGTTA ACCGGGCCCG GGCAGTGGGA GAATGGGAAG CCAGGGTAGA AGGAGAGGAA
  R
  GGGGAGGTAG GGAAGGAGGA GGGATGAGGG AAATCCGGAG GAGGTTAGAG GGAAAGGAAG
  GGATGGAGGG GGAGGGGGAG GAAGCGGGAG GAAGGGGAGG GAAAAGCGGA GGGGAGGGGA
  GGGGAGTGCG GCTCTCACCA GTCCGAGCAG GCAGCTCCAG AGCAGGGCAG CCGCGGGAGC
  GTGCAGCGAG TGCAGCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45352804	mCV22628459	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss320498572	CHEV_2_126758544	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29670635					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126774728 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			within coordinates
Gm75308	predicted gene, 75308			within coordinates
Rr564422	regulatory region 564422			within coordinates
Rr564423	regulatory region 564423			247 bp proximal
Rr564424	regulatory region 564424			280 bp proximal
Rr564425	regulatory region 564425			417 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			902 bp upstream
Tssr26085	transcription start site region 26085			185 bp downstream
Tssr26086	transcription start site region 26086			314 bp downstream
Tssr26087	transcription start site region 26087			345 bp downstream
Tssr26088	transcription start site region 26088			407 bp downstream
Tssr26089	transcription start site region 26089			421 bp downstream
Tssr26090	transcription start site region 26090			1059 bp downstream