rs29670662 SNP Detail

Summary

• ID
  rs29670662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:120882028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTG GGCTCACTGC TGGCTCCAGC
  R
  TCCAGCCAGT GAGCCCAGGG ATTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45849134	mCV24891034	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss321667527	CHEV_5_121193972	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
rs29670662					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120882028 () rs orientation: forward

Symbol	Name	Function Class
Oas2	2'-5' oligoadenylate synthetase 2	within coordinates
Rr619422	regulatory region 619422	1545 bp distal
Rr619423	regulatory region 619423	1631 bp distal
Rr619424	regulatory region 619424	1458 bp distal
Tssr52959	transcription start site region 52959	359 bp upstream
Tssr52960	transcription start site region 52960	300 bp upstream
Tssr52961	transcription start site region 52961	265 bp upstream
Tssr52962	transcription start site region 52962	117 bp upstream
Tssr52963	transcription start site region 52963	70 bp upstream
Tssr52964	transcription start site region 52964	176 bp downstream
Tssr52965	transcription start site region 52965	263 bp downstream
Tssr52966	transcription start site region 52966	334 bp downstream
Tssr52967	transcription start site region 52967	360 bp downstream
Tssr52968	transcription start site region 52968	1742 bp downstream
Tssr52969	transcription start site region 52969	1799 bp downstream