rs29670663 SNP Detail

Summary

• ID
  rs29670663
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32901701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCG AAGTCTTCTT TCCTACACTG
  R
  ACACCTGTGT GTCAACTTCC TTAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45849135	mCV22741270	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
ss148203934	ENSMUSSNP6362980	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss321505769	CHEV_5_33087005	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29670663					SNP	G	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32901701 () rs orientation: forward

Symbol	Name	Function Class
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609417	regulatory region 609417	1893 bp distal
Rr609419	regulatory region 609419	1658 bp distal
Rr609420	regulatory region 609420	1408 bp proximal
Rr609421	regulatory region 609421	1945 bp proximal
Tssr45794	transcription start site region 45794	1762 bp upstream
Tssr50589	transcription start site region 50589	1915 bp downstream
Tssr50590	transcription start site region 50590	1960 bp downstream
Tssr50591	transcription start site region 50591	1986 bp downstream