rs29672089 SNP Detail

Summary

• ID
  rs29672089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:67102253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA CCAACCCCTT TTATCGGATG
  Y
  GGCCATTGTT GATTAACCCT CGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39603347	mCV25058568	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T		T
ss50446892	NES13446933	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T		C	T	T	T	C	T	T	C	C
ss147343246	ENSMUSSNP1484006	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29672089					SNP	T	T	C	T	C	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50446892	NES13446933	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:67102253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10165	CpG island 10165	within coordinates
Gm50164	predicted gene, 50164	within coordinates
Rr356406	regulatory region 356406	1489 bp distal
Rr393837	regulatory region 393837	342 bp upstream