rs29672434 SNP Detail

Summary

• ID
  rs29672434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121380470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCT CAGCAGACAG GAGGATGGGC
  R
  GACAGGCATT TCTAGTAGAA TGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45350245	mCV24429901	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147390381	ENSMUSSNP6557761	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320483654	CHEV_2_121375725	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29672434					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121380470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr406973	regulatory region 406973			6 bp proximal
Rr563848	regulatory region 563848			1352 bp proximal
Tssr25942	transcription start site region 25942			368 bp upstream
Tssr25943	transcription start site region 25943			1275 bp downstream
Tssr25944	transcription start site region 25944			1288 bp downstream
Tssr25945	transcription start site region 25945			1364 bp downstream
Tssr25946	transcription start site region 25946			1394 bp downstream