rs29673126 SNP Detail

Summary

• ID
  rs29673126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:125231185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGA CATCCTGTCT AAAAATAAAA
  Y
  GTAAAAAGAG GGGCAGGGGT GGTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45849070	mCV24593305	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss149207524	ENSMUSSNP387488	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss321674429	CHEV_5_125634491	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29673126					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:125231185 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ncor2	nuclear receptor co-repressor 2			Intron
				Noncoding-Transcript-Variant
Rr620651	regulatory region 620651			73 bp proximal
Rr620652	regulatory region 620652			681 bp proximal
Rr620653	regulatory region 620653			1331 bp proximal