rs29673148 SNP Detail

Summary

• ID
  rs29673148
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:134487851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT ATCACACCTC TGTCCCATGC
  R
  ACAATGACAC TTCCTTATCA CCCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
ss45350855	mCV25095777	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss147634582	ENSMUSSNP3490181	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320513939	CHEV_2_134471667	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	LG/J	SM/J
rs29673148					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134487851 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12319	CpG island 12319	1571 bp distal
Rr55684	regulatory region 55684	1250 bp distal
Rr397337	regulatory region 397337	1578 bp downstream
Tmx4	thioredoxin-related transmembrane protein 4	1810 bp upstream
Tssr26507	transcription start site region 26507	1889 bp upstream
Tssr26508	transcription start site region 26508	1873 bp upstream
Tssr26509	transcription start site region 26509	1822 bp upstream
Tssr26510	transcription start site region 26510	1788 bp upstream
Tssr26511	transcription start site region 26511	1765 bp upstream
Tssr26512	transcription start site region 26512	1743 bp upstream