rs29673937 SNP Detail

Summary

• ID
  rs29673937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164586798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACG GTTGCTGGAA ATTACTATTA
  Y
  ATTAGAATAA TTTAAGGAGT TACTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45351553	mCV23594283	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss148231815	ENSMUSSNP1870191	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320606893	CHEV_2_164570378	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29673937					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164586798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12667	CpG island 12667	699 bp proximal
Dnttip1	deoxynucleotidyltransferase, terminal, interacting protein 1	1137 bp upstream
Rr569686	regulatory region 569686	479 bp proximal
Rr569687	regulatory region 569687	1043 bp proximal
Tssr21635	transcription start site region 21635	1101 bp upstream
Tssr21636	transcription start site region 21636	1150 bp upstream
Tssr27522	transcription start site region 27522	1770 bp upstream
Tssr27523	transcription start site region 27523	1754 bp upstream
Tssr27524	transcription start site region 27524	1731 bp upstream
Tssr27525	transcription start site region 27525	1697 bp upstream
Tssr27526	transcription start site region 27526	1667 bp upstream
Tssr27527	transcription start site region 27527	1018 bp downstream
Tssr27528	transcription start site region 27528	1038 bp downstream
Wfdc3	WAP four-disulfide core domain 3	within coordinates