rs29674906 SNP Detail

Summary

• ID
  rs29674906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21374141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTTGTCTG CCAGTGAGAC TTTAAGTCTT CAGCCTTGGA
  ACTGAACTTC AGACTAAGGG ATGCGGAGGC AAGCTCGTGT GGGGAGGGGT GAGAAGTGCC
  Y
  GGGTCTGTCT ACTTTAGGCA CTCATGGAAA GCCTTTCCTT GCTGTGCAGT GGTGGTGGCG
  GAGGGTCAGG GGACATAGCA ATTGGCCCCA ATCCTTCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45352862	mCV25436476	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss146347181	ENSMUSSNP2495414	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29674906					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21374141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11263	CpG island 11263	1225 bp distal
Cpgi11264	CpG island 11264	99 bp distal
Gm13327	predicted gene 13327	219 bp upstream
Gpr158	G protein-coupled receptor 158	within coordinates
Rr56373	regulatory region 56373	within coordinates
Tssr16468	transcription start site region 16468	1790 bp downstream
Tssr16469	transcription start site region 16469	1782 bp downstream
Tssr16470	transcription start site region 16470	1734 bp downstream
Tssr16471	transcription start site region 16471	1713 bp downstream
Tssr16472	transcription start site region 16472	1460 bp downstream