rs29674983 SNP Detail

Summary

• ID
  rs29674983
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:38763071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAAAAGTG GGAATAATCG TTATACCTAT CTTACTGGCC
  AATTTTTCTT CTAAGTTAAA TTAGATGAAC TGTATATGTC CTGGTTGCCT TGAAACCCAC
  W
  CTTCAGATTT CTAGGTACCT GGTTCTGAGC TCACACCCTC CCTACCCTCC TTTGAGAGAT
  TGTGTCTTTT ACTTCATAGC CCTGGCAAAG CAGGAATTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39604670	mCV23939994	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss146968956	ENSMUSSNP6120504	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss325587767	CHEV_18_38789672	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29674983					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:38763071 () rs orientation: forward

Symbol	Name	Function Class
9630014M24Rik	RIKEN cDNA 9630014M24 gene	within coordinates
Arhgap26	Rho GTPase activating protein 26	within coordinates
Cpgi9980	CpG island 9980	1434 bp proximal
Rr393574	regulatory region 393574	444 bp downstream
Rr393575	regulatory region 393575	803 bp upstream
Rr536560	regulatory region 536560	896 bp distal
Rr536561	regulatory region 536561	1124 bp proximal
Tssr150807	transcription start site region 150807	1649 bp upstream
Tssr153047	transcription start site region 153047	1519 bp downstream
Tssr153048	transcription start site region 153048	1542 bp downstream
Tssr153049	transcription start site region 153049	1592 bp downstream