rs29675313 SNP Detail

Summary

• ID
  rs29675313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:67100644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGACAAA GGCTGACAGC
  TGTGATGTCC CAAAGTCAGG CCACTGCTTG CCAGCTCAAA ACCCCTTGCA GCTGCCAAGA
  AAGATTGCAG GATGTGGTTT GTGGCTTCAA AAAAAAAAAA GTGCTCTGGG CACTTAGGGC
  TACATTGGTC CTGAATACCT GAATGTAGTC TCAGTTAGCT AGAATAAAGA CTTTCATTTG
  R
  CTACCAACTG TCTGAGTGGT CTTCTCTGGT GGGCTCCTAT AACAGCTGAA CTATGACAGC
  ATTGCGAGAG CCTACAAAGT ATTTAGAAAG TTAGGAAATA GAACCCTATG ATAAAGCAAT
  TTTATATATT TCTTAAATGA ATAACAGAAA TGAATGAAAG ATTTTAATTT CTATTTATTC
  TATTTCATTT GTCCTTCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39603393	mCV25058548	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss147343206	ENSMUSSNP2841957	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29675313					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:67100644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10165	CpG island 10165	1378 bp proximal
D18Mit209	DNA Segment, Chr 18, Massachusetts Institute of Technology 209	1682 bp distal
Gm50164	predicted gene, 50164	197 bp upstream
Rr355164	regulatory region 355164	1044 bp distal
Rr356406	regulatory region 356406	within coordinates
Rr393837	regulatory region 393837	1951 bp upstream