rs29675441 SNP Detail

Summary

• ID
  rs29675441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119821562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTGGTAT GGAAGTCGGG GCTGAAGAAC AAGGTAGCCA
  GGCCAGCCAG GAGCGCGGGT CTTTGAGAGA CTTCACCGGA ATCTTTCCCC CTTCGTGTGT
  Y
  TAGTGGAAAC ATCCCCCCTC CTAAACAAAC TAACAAAACC AATATGGAGG TGGGGGGAGA
  TGAAGTCCTG TGGAACTGTC TATGAAGACT GAAACTCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45849903	mCV25099980	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss149174071	ENSMUSSNP146500	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321665993	CHEV_5_120133506	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29675441					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119821562 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16459	CpG island 16459	431 bp distal
Rr378542	regulatory region 378542	1770 bp downstream
Rr619145	regulatory region 619145	1250 bp proximal
Tbx3	T-box 3	within coordinates
Tbx3os2	T-box 3, opposite strand 2	1591 bp downstream
Tssr1618	transcription start site region 1618	1033 bp upstream