rs29675713 SNP Detail

Summary

• ID
  rs29675713
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123128620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGA GCACTGGTTC AGACAGATAC
  R
  GGGAGGAAGT GGCCTTGCCA CCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45850794	mCV24884196	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss149192222	ENSMUSSNP4043034	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss321670138	CHEV_5_123440566	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29675713					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123128620 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16565	CpG island 16565	1828 bp distal
Cpgi16566	CpG island 16566	1024 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	249 bp upstream
Kdm2b	lysine (K)-specific demethylase 2B	1287 bp upstream
Rr620031	regulatory region 620031	1534 bp distal
Rr620032	regulatory region 620032	1409 bp distal
Rr620033	regulatory region 620033	1262 bp distal
Rr620034	regulatory region 620034	761 bp distal
Rr620035	regulatory region 620035	616 bp distal
Rr620036	regulatory region 620036	within coordinates
Rr620037	regulatory region 620037	260 bp proximal
Tssr48730	transcription start site region 48730	1305 bp downstream
Tssr48731	transcription start site region 48731	1276 bp downstream
Tssr48732	transcription start site region 48732	1242 bp downstream
Tssr48733	transcription start site region 48733	1191 bp downstream
Tssr48734	transcription start site region 48734	945 bp downstream
Tssr48735	transcription start site region 48735	818 bp downstream
Tssr48736	transcription start site region 48736	795 bp downstream
Tssr48737	transcription start site region 48737	614 bp downstream
Tssr48738	transcription start site region 48738	201 bp upstream
Tssr48739	transcription start site region 48739	218 bp upstream
Tssr48740	transcription start site region 48740	233 bp upstream
Tssr48741	transcription start site region 48741	298 bp upstream
Tssr53170	transcription start site region 53170	1852 bp upstream
Tssr53171	transcription start site region 53171	1477 bp upstream
Tssr53172	transcription start site region 53172	1446 bp upstream
Tssr53173	transcription start site region 53173	1277 bp upstream
Tssr53174	transcription start site region 53174	1219 bp upstream
Tssr53175	transcription start site region 53175	267 bp upstream
Tssr53176	transcription start site region 53176	150 bp upstream
Tssr53177	transcription start site region 53177	94 bp upstream
Tssr53178	transcription start site region 53178	62 bp upstream
Tssr53179	transcription start site region 53179	28 bp upstream
Tssr53180	transcription start site region 53180	within coordinates