rs29675722 SNP Detail

Summary

• ID
  rs29675722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:147377470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTAAGAAG CAAAGAGTGA TGAATGCTTG ACTTTTTTTT
  TCTTAATGTA GTTCAGAATG CCTGTGGAGG GAATGGTGCC ACCCTTGGTG GGCAGGCTTT
  Y
  CAACCTCATT AAGGTAGTCA AGGTTTTTAT TCCCAGACAT GCTCAGAGAC CTTTGTTCCA
  GTTGGGAATG GGTTAACCAT TCCAGGGAAT TAGCTCCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45850393	mCV22624893	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss144672932	ENSMUSSNP3680132	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29675722					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:147377470 () rs orientation: forward

Symbol	Name	Function Class
Gm42883	predicted gene 42883	1049 bp downstream
Pan3	PAN3 poly(A) specific ribonuclease subunit	within coordinates
Rr624946	regulatory region 624946	1010 bp proximal
Rr624947	regulatory region 624947	1319 bp proximal
Tssr49828	transcription start site region 49828	1320 bp downstream